PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007086
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 488aa    MW: 54595.1 Da    PI: 6.7271
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007086genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.7e-12302345755
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  + Er+RR ri++++++Lr l+P+ +      K++ a+iL  A++YIk+L+
  DCAR_007086 302 ITERNRRTRIKEGLFTLRALVPNiS------KMDRAAILGDAIDYIKELE 345
                  68*********************66......****************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-1513157IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.36E-15288358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.243295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.80E-12298346No hitNo description
SMARTSM003534.8E-13301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-10302345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-15302360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MIVGALERAV EWLRPLVKTQ EWEYCVIWKL GDDPSRFIEF VNCCCGGGDG VNECDGIVKE  60
EGGGDGLCRD YNFQHRIGSD ACVKLAQYPF SLPLYSGIHG EVAMSNQPRW LSYGSTTDLN  120
NETVGTQVLI PVTGGLIELF SKQNVPCDQK LIELITAYYN VSVKQEIMSA HSHNDKSLLE  180
KLHKHPFVVE QLNDQCHFNS MSRLQSLVTG SQASPYGIEG SSAGSTPSNE YLLLQSGSSH  240
VSPNLSPIKS IGNPTKSWKR KLNEEMPKDE VARVANHVFD KKDKVKGKQK TGKEQYYSKN  300
LITERNRRTR IKEGLFTLRA LVPNISKMDR AAILGDAIDY IKELENTARN CQAELKEMEE  360
DGCSKDNGAS EILELKGSYE DNKRSLANET LQGSAVADQN QPIQQMPVEI EVNQISQKDI  420
WLKVVHSQKR DGFLRLMKTV HSLGLQVIDA NVTTCKGRVL NIFKIEATQK EFEPQKLKDL  480
LLTNWTL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99292227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.17e-58bHLH family protein